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To partition the USB stick, download a Linux Live CD (Puppy good choice, 100Mb and loads in RAM) then use GParted (within Puppy) to create the required partitions.
As regards windows detecting and as has already been stated, you need to turn the flash drive into a disc drive (or at least fool windows that it is) otherwise windows will not be able to detect the multiple partitions created.
I know that flipping the usb flash drive into a disc drive will work on XP as per link but unsure as to whether windows 7 has the software available yet.
Bear in mind also that flash media can be very unreliable with much shorter life expectancy than disc based media.
Good Luck
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